For all registered users, I have added the option to select, visualize and analyze chromosomal imbalance data directly from the Progenetix data set:
1. go to http://www.progenetix.de/~pgscripts/cgi-bin/front_armcluster.cgi
2. go down to "Data Access (registered users)"
3. use your registered email + password
After a short interval, you will be presented with the option to select specific entities/loci/techniques. You can select in any of the categories, using multiple selects.
Example:
--------
8140/0
8140/3
8140/3
8144/3
--------
C15
C16
--------
CGH
aCGH
composite
composite aCGH
--------
... would result in 497 of 15422 cases, which could then be downloaded, or used for ideogram generation, clustering etc.
PLEASE DO NOT SELECT VERY LARGE SUBSETS for online analysis; some of the downstream tools choke at about >1000 cases.
I would be glad to receive some feedback and suggestions! And, as always, please provide your published (a)CGH data.
