Though not very apparent, he codebase has been changed a lot. This is mostly in the "Tools" section. However, some tools are not completed yet; e.g. one cannot directly load ISCN annotated files for visualization, or process aCGH data matrices. In "emergency" cases, you may email me. Segment lists should work fine; so pls. check the output options of your aCGH software first.
Happy Holodays!
Michael.